Scaffold Ga0209647_1052425

Overview

Basic Information

• Taxon OID: 3300026319
• Scaffold ID: Ga0209647_1052425
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2185
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060678	Metagenome / Metatranscriptome	132	Y
F073743	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209647_10524253	F060678	AGGAGG	MSSQTRSDGRPVPRSTELVGSLRDAVEDFARHSRKNSEAIEVIVHALKAVHQDLQEEKERSQLLEARVRKAEDGLVDLARVVAAWRRQGWVQ
Ga0209647_10524254	F073743	GGAGG	VGSEQIRIFVDSWAVAWSALLLLGYVADLTPWPSLKVLRADSVARTMLALSAAAVLGLTLAGAREPSAILAAWAIITSSVKLLYDSLGELW