Scaffold Ga0209647_1047131

Overview

Basic Information

• Taxon OID: 3300026319
• Scaffold ID: Ga0209647_1047131
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2354
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002853	Metagenome / Metatranscriptome	526	Y
F007488	Metagenome / Metatranscriptome	350	Y
F009917	Metagenome	311	Y
F106044	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209647_10471312	F106044	AGGAG	MPNLTYNATWDFNPGDTVTLNASFTFDLQDPNDNQTVSGVLTTLQGRTPHVTLAQTDSATISVVVTI
Ga0209647_10471313	F007488	GGAG	VYEESDLGALRAIHARQGFGYAFPDLSDPLFLTKLVLGREEDGKGIAGAALLRLTAEAYLLLDPEAGSPREKWQWLLGLHEATRCDALARGLEDVHAWLPPQIAQKFGKRLARLGWVRDDVWTPYCKKLS
Ga0209647_10471314	F002853	GGAGG	MGRGAQGQTQSLTDNQLNQTNALNQQLLGQRQSVGNLVVPQFQSILNNPGFSAADKAAITGQSQGALASAFDSLQQSATNRAARTGNSAGFSELTDDLARQKGIAEGNLAQQNQLNFSNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRANASRNNGGFFSSLGSSLGGALGGVPGLFL
Ga0209647_10471315	F009917	AGGA	MGTSGWTYVVVVFSLGAQLVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALNTIAEQQGIHLDEPPMVNYVDLRNGGRHR