NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209647_1018305

Scaffold Ga0209647_1018305


Overview

Basic Information
Taxon OID3300026319 Open in IMG/M
Scaffold IDGa0209647_1018305 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4407
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000781Metagenome / Metatranscriptome895Y
F002853Metagenome / Metatranscriptome526Y
F007488Metagenome / Metatranscriptome350Y
F064567Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0209647_10183053F000781GAGGMLTVAQLAPLKDRDPYLYETLVKIVSALNATSQRAGVDPSTPAPAPSSIASLTVQASNGWFDLAIADPANSRPGLFYFAESDATPGFNSPRVYFMGSSRNLYVQLGNQALYWRAYSQYIGSQPSAPVTFGNPPSAIAGGGPSGPAPLPSQGSGALPNGLPRGGNGFGIHAGSRVVRQSLL
Ga0209647_10183054F007488GAGMRVREYKEEDLERLRQIHAAQDFPYGFPDLQNSLFLTKIVLTDGEGPEQRVRGAALLRLTAEAYLLLDPSQGTPRDRWQSLLALHAAAQQNAWQRGLEDVHAWLPPSIANKFGRHIERLGWLRDDAWTPYCKRLSPPSANIGIES
Ga0209647_10183055F002853GAGGMGRGAQDQTRQLTDQQLANINSLNQQFFGQQQQVGNLLVPQFQNILNNPGLSAADKAAVTGQSQGALSSAFDSLQQAAANRAARTRNSAGFGELADDLARQKGIAEAGQAQRNQLDFTNTAFQRQMAALQGLSGLFGVDSNLLARGLGIPADLLNVRASASRPSGFFSSLGSTLGGTLGSLPAAFL
Ga0209647_10183057F064567GGAGVTAAPDKLLAFACSAAQAHGLDASLVCAVIEQESSWNPWAMRYEPAFFAKYVASLYTNNKVSATE
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