Scaffold Ga0209647_1011029

Overview

Basic Information

• Taxon OID: 3300026319
• Scaffold ID: Ga0209647_1011029
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6063
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028928	Metagenome / Metatranscriptome	190	Y
F029228	Metagenome / Metatranscriptome	189	N
F033539	Metagenome / Metatranscriptome	177	N
F090347	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209647_101102910	F033539	AGGGGG	MNKLVVMMAAVSAIAAIIGASDASAQSWGRRGANVRCLNGGVVQGRWYCNLKHAPPGEWNNYRSTGRYKLRAGMQGR
Ga0209647_101102911	F090347	GGA	LATVPGGPLGEGRGGNQREDIARRLQRLEEALEGTEYGATSRMARRLEIGFTRWHNAKSGGGLSQNLTLILLEQIPGLSADWLLRGRPEGLSYEMARVLGAPDRTD
Ga0209647_10110293	F028928	AGG	MRHVATAADRIDYWIRRHIVTCATPSNAPAADLHVGLAAIGRSLRDQYDALAAPVPPSLAALVKQLEAQSFLPR
Ga0209647_10110299	F029228	AGGAGG	MKNCLSGLGSALFLLLMLAAPANADACSYRMGPFVTQDAAQAAAQQARYLGFEASGVWGQGGLYSDWSNRRYFFNVFYEC