Scaffold Ga0209647

Basic Information
Taxon OID	3300026319 Open in IMG/M
Scaffold ID	Ga0209647_1009927 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026319 Open in IMG/M

Scaffold ID

Ga0209647_1009927 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6470
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6470

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (80.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Laytonville, California, USA

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022248	Metagenome / Metatranscriptome	215	Y
F026812	Metagenome / Metatranscriptome	196	Y
F050161	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209647_10099275	F022248	GGAGG	METMLGFAGVVVITMLALFAALALQTALLHLTLRLMQPATADRRTVRLTVAHGTRMVARAFQLQR
Ga0209647_10099278	F026812	GGA	MAAAFVVWGMATGAGIAQAQAPSCSDLRAQKEKVYGFHLTQLNETQIDAKSKEIDAYWKQLQSAGPDGVGCLKDMLSAEKTDHIFQFDAASFLFQLDKSPESMSLVKDAIVQTDFQETDPANYLSLGLELGQRGANIQSLAARLLLFPNAVIHISEHSLDLDSDTAALFLYGSMDPAKACKALIAQLQAQEPFVRAAAAHLLAEEMTEEALHTLSTWGGLADVKEDYRRNDIQSVMTYQAPNPAEFANPKWTREQVLQILAGLPHTRKEFDDVMSTRGAEFDRQMREKKPSQEELTKAVAESEPIYGITDRTAFQNSAVATLKAEDFNTLREARRRALYNISDESLSEYLSYTQVMIRLMNRLDLFKDYRAH
Ga0209647_10099279	F050161	GGAG	VQSFGKDRWKIVRTRFRFARVLLSLAVWAGICWFSTPAVADGDLALREAAQKLAERVATIPGLHGALRLEWHPEAAWSEAESTRWQETLKEEFERRTLSLTEDAGAAALEVFAAETPTQVVLTAKTRVSEREEVRIVAVTRSLLPSGLLPVAPIRLERQIIYESEDRILDASPLGNRENEGLAILLYRSFEIVALRVDLKGAVKETVQLNPASLKPSRDPRAELTSRGASVLVLLPGKVCEFSWEASGEVKCHVEKPLPPDKSDWRGQTLLTSPCDGSSWKLLYTGSDPNARELLQVVPNGAVRETSAAVLSEFPGPIIRTNGEGNPNSALVIARDLRTGNYEIYKITLACGS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209647_1009927

Overview

Ecosystem & Geography

Associated Families

Sequences