Scaffold Ga0209647_1008675

Overview

Basic Information

• Taxon OID: 3300026319
• Scaffold ID: Ga0209647_1008675
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7015
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003695	Metagenome / Metatranscriptome	473	Y
F011884	Metagenome / Metatranscriptome	286	Y
F017522	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209647_10086754	F011884	GGA	MPWSGFLSRAMQSMAVRGFIVHNRESGSYALTASGRAALTAILEDAGLK
Ga0209647_10086755	F017522	GGAGG	MPSRAQRERSDRRRALRLLADAPEGMTEALMLAHGFRVELLVDLCIAGLVTAKPEQMRAGRRMMEVVRMKITEAGRHALTGKDSP
Ga0209647_10086759	F003695	AGGAGG	MAQDSLAFRFAVVLALAMIILVIMTLAAPLHPANDTAATIPPSDAIYRPQHLNLY