Scaffold Ga0209647_1008634

Overview

Basic Information

• Taxon OID: 3300026319
• Scaffold ID: Ga0209647_1008634
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7033
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016033	Metagenome	250	Y
F020242	Metagenome / Metatranscriptome	225	Y
F034094	Metagenome	175	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209647_10086342	F034094	AGGAGG	MPGHILLRPLKWVQEISHYPANNVEGRNLKVSCTPAAAPDLLLSNNAKLTDLAAELGILIGERPIDGDGNPLKQGIGCFYFSDAQAPRDDLPGMLDPLLHGWFYLKPDSYAAVWDQVRDGYAGCNITMKVGPVQNELPPKVWDVSQPLFILAVSLRFTRKPIADKPADNFDSRPRIKRLNSGTMFGNPLRSFFASRTP
Ga0209647_10086343	F016033	GGA	MAKHIEDVSQFLQSFGVAPLALLFLPVLITALARNVILALATGLLSFASLMLFVAPASATSGLAIVSGLGSFLVALESVVARGRMLALNKEIADLTSRVNQLERAEQRRLMLEIKESGHPRH
Ga0209647_10086345	F020242	GGA	MEFDMSNFQALAANLVVECEVCDLAHAKLSTQPETDTEIAPLILQVAATSIAEIDLLIAELQEAKNYLQSEGERIEREIVRYTNLTQMASFTAEMISEAVSQWLP