Scaffold Ga0209647_1002862

Overview

Basic Information

• Taxon OID: 3300026319
• Scaffold ID: Ga0209647_1002862
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13741
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (86.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014771	Metagenome	260	Y
F021893	Metagenome	217	Y
F073304	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209647_10028622	F014771	AGGAG	MRAKGSITQLVRKARPGYILGEDGCLVAFDESALEGLDPHELSIGDWVEYEELDRMEGRRASKIKPLIQRAEE
Ga0209647_10028627	F073304	AGGA	MATRSWHSRGLPAWRIWLLSCLGRLRNIKNLASGEFPFAGGLVLLLSASILWREFPMAVTAAGLVLILQEIADPSPLFLTVPWEALEFVLSRKVRANHFWLHRTQGLLRESGDSLAKIDGCATRDGFFIIGAAFNEAQIQWASQSAWRATCQKPYAKEAATGCKTMRFLLALWLIAGGFAALSLFRGVDLGSGLLLCALCGAAGQLLAEPAEKLLGPWAGRVARSTTETWPSRLEVESLAIPRFLWFKRSLLFQVRRMPAQESNGG
Ga0209647_10028628	F021893	AGGAG	VPDYYTSQQLAQTLGIAEATIAELQTKGLLQPTVKDGRSFFSSRQAHCLRAALRWARKDKTDLQEAFARVEERWLAHTSATKD