Scaffold Ga0209647_1002373

Overview

Basic Information

• Taxon OID: 3300026319
• Scaffold ID: Ga0209647_1002373
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15304
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000217	Metagenome / Metatranscriptome	1557	Y
F000440	Metagenome / Metatranscriptome	1137	Y
F004017	Metagenome / Metatranscriptome	457	Y
F030676	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209647_100237313	F004017	GAGG	MRGRTTALVFSVTLLGFAGGIAIRVPGARQAPAADQPPSEQERARLLSTGKELFLARCARCHNERGDKPLKTGPPLNERGLSTDEIARAVNGRLRDKTGEERRAVTLYISSLMKTRDSEEKPASKP
Ga0209647_10023734	F000217	AGGAG	MTAKILTFSSHGDTTLLEYDPATADMEEVNKVIAEYEAKTGAQPFDMATGERIERVTRQQNEVLMVHPIAGG
Ga0209647_10023735	F030676	GGA	MALAILSVIVFLALIVWRFVFNGQQRRPVVREIGVPRQQDNSFLEQGLRILDLVGVAVIPDNRFEKGSNGAQPIAPRDRAQTYLRRVVALTGATLMGRGYVLDVGTTRFEVRDRYVRRLRDLTDPTCAYEETCFYSADKSMPKAKQIATALLQLKNNPALFDRWVHQCGLAFKADGQVFTRAQ
Ga0209647_10023736	F000440	N/A	MRMQTKFTRAQRAAEYLKRVAALTGAKEDDDGTYHLTAGSTHFLVDSKFVRVLSPRSESTCFSVAADLDMPSAEVVASALLQLKNNARLFEKWRDWPAHSFKANGKMFRDTYQLTRDET