Scaffold Ga0209647_1002329

Overview

Basic Information

• Taxon OID: 3300026319
• Scaffold ID: Ga0209647_1002329
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15446
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012250	Metagenome / Metatranscriptome	282	Y
F051400	Metagenome	144	Y
F081726	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209647_100232910	F051400	GAGG	VLETAIEEKRKREDLKAKRDLLFERYLKHPMDTRLAIEIKNIDDQIAENTKLTNRKTGSR
Ga0209647_100232916	F081726	AGGA	MSTNNTFGTILIRENTHLPAGLAIGSEVFLPGWRIVKNLDGYGLGQKIHETKWYFFYLAGEIRAIALGREGLGTPRRAVVQILAKREGQKFNSLEITKVASKRFLGIPFMSITAHFRHIQQGICLVPAKNFVLRMLESGSNGGGEERHGAVAGKQYAALISSS
Ga0209647_10023296	F012250	N/A	VTRFLLARALESRAELDLYRGIVLATDTVVCRLTADIETMERRVKERDSGVSQRKYVARVAKLNVVLDHARLEDFCISSENRSITDVAHEMLVRAGWISM