Scaffold Ga0209647_1000064

Overview

Basic Information

• Taxon OID: 3300026319
• Scaffold ID: Ga0209647_1000064
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83640
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (78.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000626	Metagenome / Metatranscriptome	976	Y
F002013	Metagenome / Metatranscriptome	604	Y
F004921	Metagenome	418	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209647_100006431	F000626	AGGAGG	MPIVKKAPGIMTREVKLEEPVNELLEDYARLIESNADHVVNTVLKKVLWRDQDYRKWREARRTPQPGSDKGQAVEVRGRA
Ga0209647_100006469	F002013	AGGA	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSMINLQFMLEMRKLEELDESYFNEEFNVWLSDEPLTNEEICGLMRGVERERKLDGKPPLVQFLPRGKRTKKAPKKAEGVHSSRKPNGPMPSVPGVESTVPKDAHA
Ga0209647_100006470	F004921	AGGA	MPKKKKPKAVMVDGIPIKPISPAEHRRLERRIKKKYEKLRQRYPEVHGKKVDWISHWHEEGYLSFNVRFTDGKNFSILCSPTIVTNVVDFSDVKTGDSVIIREYYRRRDED