Scaffold Ga0209471_1010878

Overview

Basic Information

• Taxon OID: 3300026318
• Scaffold ID: Ga0209471_1010878
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4758
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y
F004349	Metagenome / Metatranscriptome	442	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209471_10108783	F004186	N/A	VPTLGPAPSAKEVLAKPQQSNLKDAHFTVTGKVTDNGVTLNLVGDGALVYKPKPEGRFKFQTTVGGQTVSIEEISLDGTNYGKTPSSPKWVATNSSSGIDPTAFAGASAQKYIGEENLPQGKAWHASAKDKDGNAFDAYIRESDGYPIKYVETQTGGQNITLSFDRYNAGETITAPPADQIQSG
Ga0209471_10108784	F004003	N/A	MGRLIALMIAAGLLAACGGPGAPLGPPTAKDILSKPNHGNLQDAHFLVTGKFSGQGGTVDLKGDGELVYKAPGAGQFKFQTVVAGQTVSFEEISIGGSNYTLTQPGNGKWVSNPSSSPLGPTSFSGVSDFKYVGEENLPNGKAWHAKAKDKDGNAFDGWIRESDGYPLKYTLTQQGNALTLTFDKFNTGVRISAPPPSQVVRG
Ga0209471_10108785	F004349	N/A	MRPVKAGLWPMLATSALLTACGTSASGPPSAQDILNKPNTANVRDAHFTLVAHVVTGNISFDATGDGIIVIKPTQASKFTMETSVSGQNLKFEEIIVGGKEYDLSPDNPRWTVKSTSTSNPGSFKGTKAAYLGEANLKDGKAWHVKATDENGNPFEAWIRESDGYPLKYASTSAGTTFTASFDRFNTGETVTAPPASDIQQ