Scaffold Ga0209471

Basic Information
Taxon OID	3300026318 Open in IMG/M
Scaffold ID	Ga0209471_1001601 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026318 Open in IMG/M

Scaffold ID

Ga0209471_1001601 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13359
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (68.42%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

13359

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (68.42%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y
F004349	Metagenome / Metatranscriptome	442	Y
F006952	Metagenome	361	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209471_100160111	F004186	AGGTGG	MQLRRAVMLVAAAVLMAGCGIPTPAAPPSAKEVLAKPQQSNLTDAHFAVTGKITNNGVTVELVGDGALVYKPKPAGRFKFTTTVGGQTLTIEEVSLDGTNYGLTPASNKWVATKSASGIDPNAFSGASDQKYIGEETLAQGKVWHASAKDKDGNAFDAYIRESDGYPIKYVETQTGGQNITLTFDKYNTGEVIKAPPADQIQTG
Ga0209471_100160112	F004003	GGA	MTKVLRFAAAVGAASLLAACGGPGTPLGPPSPQDILAKPVHTSSLKDGHFLVTGKFTNNGSTVGLNGDGALLYKSPGAGRFKFQTTVAGQQVSFEDISVNGTDYTLTVPGNGKWLAKASTSGLGPNSFTGVSAFKYVGEESLPSGKAWHASASDKDGNPFDAWIRESDGYPLKYVITQQGNSLTLTFDKYNTGVAIAPPPASQVVKG
Ga0209471_100160113	F004349	AGGA	VKTKPRATLAVAVLLLAACGPVANQAAKPPTASEILNKPDQANVKDAHFTLVAHIASAGVAFDATGDGVIVVKPAQASKFTMTTTIAGQSLKFEEIIIGGKEYDLAPDNPRWTVKASTSSNPSSFKGTDAVYLGEDTLTQGKAWHVKAKDASGSPFEAWVRERDGYPLKYASTTQGSTFTATFDQFNTGQTVTAPPPSDVQS
Ga0209471_100160114	F006952	GGAG	VIGPLGTANHEIREAERRDKERRRARLTEPRRLTDRLLGQLEELNLDGVPIVPGSYDPGLAEIRSHLVGWPGIGARLLQRLHSGTRTAELIETVFTIQEVIAPSVLPAGAVIFEEPDLL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209471_1001601

Overview

Ecosystem & Geography

Associated Families

Sequences