Scaffold Ga0209471

Basic Information
Taxon OID	3300026318 Open in IMG/M
Scaffold ID	Ga0209471_1000347 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026318 Open in IMG/M

Scaffold ID

Ga0209471_1000347 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32145
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (74.07%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

32145

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (74.07%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010345	Metagenome / Metatranscriptome	305	Y
F020420	Metagenome / Metatranscriptome	224	Y
F066047	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209471_100034710	F066047	GGAG	MTSRSKNGGFDELEGLIYRLFAEKQFALALLALVMVAQLLSAQFLLLRLRPPAAQASAAPSSKQRLDVRCAGGEPRTLSGEPLNSELARGKVVVMHLASQEEICLAQVTSSGAAELVVGMSVDGQPANE
Ga0209471_100034713	F010345	GGAGG	MGLFARFWQYSIETYGGAPLLLFINLIQIALLLWVVSEGFRAQSERAISPDARRIRAARRAEIWQKQVRPLALTMMLLGPGLGLGMSTLLGALGMGALGEAMGIQVAADTLAATMAHAYREISYAYFLMVGGTFPMLLGPVIVLAARRLDEDGNDARGGEPEEVLLHTLRSLLAVTEAQAARAQLDAARTQALLERMAS
Ga0209471_100034722	F020420	GGAG	MIPLNVAATWTRMLSVTAGACAAAGAPGPGTRVRGKAAAAEPPSGPWLGLIDFEGLTRAERAVLEPWLYRHAEPLLLVRQLLLARPLGEEIFVELTAQALEAMPEGWRDSPRPILILAPAGRTGPERRKQYLEALSRLRIPLVARGSELWAIREFDKDFLVALAQLRDPLERAAFRSAIDPSQTRLFDQQLPAAEAALLDDLVGARDEDSAVALDLAALSSLHPQAHPLALYGAVERAHNRRRAESERTQFSARTIQARLSARAFPEVPRDCSAEFAERASSVAPLLPADVQRLFEASELLLW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209471_1000347

Overview

Ecosystem & Geography

Associated Families

Sequences