Scaffold Ga0209154_1062401

Overview

Basic Information

• Taxon OID: 3300026317
• Scaffold ID: Ga0209154_1062401
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1637
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026411	Metagenome / Metatranscriptome	198	Y
F027294	Metagenome / Metatranscriptome	195	Y
F080432	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209154_10624011	F080432	AGGAGG	VDIRKGQRWRCQNPKCRSEIFVSTSSRVQGRSNLRCSCGEIMKKPYVRPGLNTFESAKGQHRHLEASPS
Ga0209154_10624012	F027294	AGGGGG	MSVFSGFTILITAVLVSLGIFVLCDSIARRSAEISDSVLAGAVLFSLALTLLYFLPLPRPALT
Ga0209154_10624013	F026411	AGG	MKGQGQKKKFGLEGASPGTECRAEFIFYARNQTSKLRSVEVLGDYTCDFRRPDWAHRWTDWNFGQNPYLNLFLCAKHARDLGLM