Scaffold Ga0209154_1005866

Overview

Basic Information

• Taxon OID: 3300026317
• Scaffold ID: Ga0209154_1005866
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6304
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002498	Metagenome / Metatranscriptome	553	Y
F004048	Metagenome	455	Y
F016137	Metagenome / Metatranscriptome	249	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209154_10058663	F002498	N/A	VKDQQRIYSLNKGVESLSKEEHGLFFDAVQSLGLPNEVKQAAVALYLDFKSRPIGEYNADHKNLDIFLIASISLSAKAMGDMRTDHEFESKMFVSREKLADAEERIIKSFGVQDSILPFPDLVSQLTKRQIESMADRFAERGLVSSNEREELVHRSYDYLDAAVEKGLGPKMSYRGRAAGVMLKAVRDLGLEVPEIDIARAAGFDKRSMAINTDIIDALLKDSST
Ga0209154_10058666	F004048	GGAGG	MLPEFLKGKLSLDEWKILIALHLVRFKAYNQTRMSRLLGKIALAPRGLFFLLLFYIPAAATGGLSGPVLYFPSPIFLIAALWIRRSLRKSLKRREFELDRNVAKQLGTQQVSQVLEKLEELDQKRIPADIRLFLLPYVAYWNPSIKERIRELGNPSLEDLPRPARIPKIGLRGRVIIVLVGFGIFWGAGLVESNFFARGQTMIVCRDVTCAALVVIAAVGFWMAIIGGISIVVWILRRFL
Ga0209154_10058667	F016137	GAG	MAELDVEIGRVQHEMNERQAKGKPTLDLEKRLEELESQKHELVERIEALWSA