Scaffold Ga0209154_1002925

Overview

Basic Information

• Taxon OID: 3300026317
• Scaffold ID: Ga0209154_1002925
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9392
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002266	Metagenome / Metatranscriptome	576	Y
F005236	Metagenome / Metatranscriptome	407	Y
F057254	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209154_100292510	F005236	AGCAGG	MGFFSIMGKILIALAMLTLPIAVSLILVFSETLTTIGVAIWLGASIFLFFCGIYAGFLGIKYERLQQQFESFVNPLKIRPNAVNLIKAICPIDHEQVVFVHVSPHRDDARPDGLDIFLGSCGHEVHRGEIELEQPAESA
Ga0209154_10029257	F057254	AGGGGG	VAAVAGLALYAYITQSATSLAPSNSGLIYIQIGAVVTLIVLLIAFGVLIPTSRKLVALLKQSQKQAVPGGDATMSAQVGNLQKRLGMAARLGVFLLAVTFILMIVGASI
Ga0209154_10029258	F002266	N/A	LKTQGEIIEFIHNKGLVSALGGNELPSFISGILGKPWKPSAKGFSGWLDWWSIKISGEPVARVSRDIEGRKDILATRIFRRTKTFVSGELWPILDIIVKHHQDPAIKHQILSDIELKILETIGTEGSIRTDRLRKKLKLEAKENNSKFHRSLSHLENYALIVGVEDPHPERHLHANIWQTWDTRTQEGKSHARLPYSEALSKLFVKTIDACVLAREDQVPTWFEWSSEMQAAKEQSLLDGVVLRSGQYLVSSRVRNVNN