Scaffold Ga0209154

Basic Information
Taxon OID	3300026317 Open in IMG/M
Scaffold ID	Ga0209154_1001446 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026317 Open in IMG/M

Scaffold ID

Ga0209154_1001446 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13903
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (84.21%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13903

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (84.21%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001093	Metagenome / Metatranscriptome	780	Y
F009323	Metagenome / Metatranscriptome	319	Y
F010455	Metagenome	303	Y
F016382	Metagenome / Metatranscriptome	247	Y
F024995	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209154_100144615	F010455	GAG	LGKESEQTPHEKAEKTLLAIKEFKRYLEGVEKDLSGMSKKFSNREIAQGVGFAATGIHEALTYLGIVKKVVEKTERIFAKRNHVSDKETDGPLRASGDPQ
Ga0209154_100144618	F001093	N/A	MASDTKSRESWTEQEDSGRSLTPMNQLRLSRVFRFNDPQTGAPQISDFPDSNPTGDTPLEIRMKHFTEIENFSFLAHVLGHELGGTTPRPIRTVVDLQVPDDEFQNYVNTAKTLSLTDEELADTVLDVGINWEHFVASNDNLLIPEHPLKITDVQMQEKIDSLDFITEAFVKEINLRSFEKQTGTKTKKGHE
Ga0209154_10014465	F016382	GAG	LDKEDALRSPLTEIFYETLGYCFGKSLQETLGPHVEASIYDLLRRSGIRKEDVSNRFDDVVQALTSTLGTCSRVVIHRTMVEMFKEYSQRLDFSYTDSLRDRLAVLKEAVVANHVLPRRLHDDSTFDSVEKPDWTGPDTPKGQAYSSLYPMKKGVKT
Ga0209154_10014466	F024995	AGG	MMPMAMRIRDSSSTNPHGDFGSVPRSTDPDRRFAAEKAFSSVLVSTVREAVGNALGHNVLEILTAKGLLDDASNSKEFDRKLQSIFGNGAAVLERIVVKDLNRKLGIPYNSEARLDYEKSLETAKEVCFVESKLK
Ga0209154_10014469	F009323	AGAAGG	MLDPVVLPTLYFISVFQLILQVGVVFYAYRVTKLTGSFRAWTLIIVAFTILTVRNVVSLFLSLSLPADQLASLIDSVGVVTIIASSAVNVAAGVALFLGMFGLVKRFENQSKTP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209154_1001446

Overview

Ecosystem & Geography

Associated Families

Sequences