Scaffold Ga0209154_1001442

Overview

Basic Information

• Taxon OID: 3300026317
• Scaffold ID: Ga0209154_1001442
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13928
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016134	Metagenome	249	Y
F018901	Metagenome	232	Y
F039072	Metagenome	164	N
F053955	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209154_100144217	F018901	N/A	MLKTKIVAFLGLTLMLSSLLLGSRTLGYQRAILSLQLGGLFLVLGGFFRFFDNHPLHDALVGLYDLEATAS
Ga0209154_100144218	F016134	N/A	MPKPVLTVELKELHDRASEATQFLKSKVEGKMRTKGTQLEIEGAKTKQVKLQLHKFLHHQGLDHYRVLSQSGVLEVTPLEKHVLHPMEHVGSPPTAAQTTPYLFPQTPALTPEKKKTKPKHKHE
Ga0209154_100144220	F039072	GAGG	MTLLGAATIVDSIILIKFMMSLRDENYRVLTGAAIDRGISVQELLRAVIIPDWVKETPRGMVADNWPTIRTRR
Ga0209154_100144221	F053955	GGAGG	METRPRISENFLTTTELALTSTLAAVYVVSTFFPLTPFIGGPSFITLEIVMLPVIAAVLRPILAMVTVLVGSLGMALGQPSFYQTFGLPGLLVPILAVALGSIAFHYEWGPIAPWAYVLAGAIYYILFSKGGTLFWLAPYILVIVSLPAVLKTREPYRIGLLALYTAMSEQVTMNILSISLLNFPGPIWTIITPFMLTERTVATLGGTAIIVALKSQLGTRLELGHVLREVK