NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209155_1205406

Scaffold Ga0209155_1205406


Overview

Basic Information
Taxon OID3300026316 Open in IMG/M
Scaffold IDGa0209155_1205406 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)619
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016743Metagenome / Metatranscriptome245Y
F023645Metagenome209N

Sequences

Protein IDFamilyRBSSequence
Ga0209155_12054061F016743GGAGGMEGEKREHWMRLCVEAADGQDSKRLLELISEIDCLLDEREMRIRNVRREASRYVIEAAEKKAS
Ga0209155_12054062F023645AGGMTLAEDIRTKYGLTSLKAGGSCLALTAINEALEAAAEIADRSHAPEIANEIRALKWEAKMPSYASEIQTERDVA

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