Scaffold Ga0209155_1018545

Overview

Basic Information

• Taxon OID: 3300026316
• Scaffold ID: Ga0209155_1018545
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2939
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002840	Metagenome / Metatranscriptome	527	N
F031993	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209155_10185452	F031993	GGTGG	MVARLRAALQRPQVLLAKSVAAWRVACSQAEGASTESEVEAEAGTVKAWKSSDQLS
Ga0209155_10185453	F002840	GGCGG	MDPRPPVIRDQDKIDVRLTGEADYRIPFTFIEALNEGTLFDRPAHAFLDAARERRLFHVLNRTTDNIIGTGIIQSASGDESSAKRAEVGGLMFHPAARGFGLCSLLVKIMMVYAIKESGRDSPDEEYLAHVIDGNGAPLHSLLEAGFRPIGPVDVHRGDIDAVIDYMIKGGESVVHMHGFVFDREVIGKLVLSLWKFVNEDHGVITRSDPAGDIRLTVDFSQVIPPTHLTIWLEQLQP