Scaffold Ga0209155_1016196

Overview

Basic Information

• Taxon OID: 3300026316
• Scaffold ID: Ga0209155_1016196
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3182
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209155_10161962	F004186	GGCGG	VPTPAAPTANEVLAKPQQSDLKDAHFTVTGKITDNGTTVDLVGDGALAYKPKLAGRFKFTTNVGGQEVIIQEISLDGTNYGLTPASPKWMATKSTSGIDPSAFAGASEQKYVGEENLPQGKAWHATAKDKDGNAFDAYVREKDGYPIKYVETQTGGQNITLTFDKYNTGETITAPPADQVQQG
Ga0209155_10161963	F004003	GAG	MAVAAVGLLAACGGPGAPLGPPSAKDILSKPLHANLNDAHFVVSGKFVSSTPGGVAVDVHGDGALVYKNSGAGRFKFETTVAGQKVSYQDISVNGVDYTLVVPGNGKWTAKTTTSGLGRDSFTGASDFAYVGEENLSSGKSWHAKAKDKDGNQFDGWIRESDGYPVKYEITQQGNALNLSFDKYNTGESITAPPASQVVQG