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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026316 Open in IMG/M |
| Scaffold ID | Ga0209155_1000351 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21557 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (85.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F045323 | Metagenome | 153 | N |
| F061210 | Metagenome | 132 | N |
| F087677 | Metagenome | 110 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209155_100035113 | F087677 | AGGA | VADMPAQQGSDSIAVGSGTPDERRDIQLAIDHWQRNTWGPDSIPLLDTFDFAPLRERWGHWFLICGNHSVESAVFVSYGAGFAQLLGLAHEPVTDLPCIEQVPVPYRAMFSAGYNRAGSASSPVTLDGTFRFEKRVELYRAVFMPIMLQPNWSKQLIFGSFNRRELGAV |
| Ga0209155_100035114 | F045323 | GAG | MAITHLSAALKHISVPEPQLERRDVELAIQHWQRNTWGKDCVPLLDTFDFSPMKTSWGHRFLICGGPAVESSVFVSYGSGFARLLGLPAKPVTIIPFIQQVPAHHREMFSEGCSKAMMESSPVTLEGTLGFGAGAQLFRAVFMPIMLRPNWSKQLIFGSFNCRPAVRG |
| Ga0209155_100035116 | F061210 | GAG | MRTTEILPEVNVIDAILLFRRFGIDVTGMAPETLREARRQLIHRHHPDRGGNLDTAQSINAAFDLLKDGVPKYRGSPFALGSFRRTHQNRRDQLLAVKLCYPEYPEWVWAGCSGDVPGRADIAVQDFTDINFIKKSMWELSGQSEYEYTIWGFDGRIFRGHVAVFGAPKAFNYMADAMATFQTRGSNRYECRAVFVHEEASRDLYLIYADGKHRGDAPVKMKHYSFNLNPGNDVDFVRELPDLLDRLKEDNRSLETRTDTASAA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |