Scaffold Ga0209686_1002344

Overview

Basic Information

• Taxon OID: 3300026315
• Scaffold ID: Ga0209686_1002344
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8957
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000611	Metagenome / Metatranscriptome	987	Y
F007303	Metagenome / Metatranscriptome	353	Y
F024516	Metagenome	205	N
F081123	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209686_100234410	F024516	N/A	FGLIVLLVYGLSAEYRSNAYQQDWISSNAPWLQYFVNGYLAAMLLGVFIGGGVLLGADYWRNRNKKTSLRTVG
Ga0209686_10023444	F000611	N/A	MNFPTYVFATVNPGRSTKVVDELKHNSQIDIIAPVTGRWDLVLRLKPNTPQNIYQTVKEIREISDVRTTDTHTGFDGMQPSKKLESQMALGFSLLNVQHTSVENTIKQLSNIPGFVEACTVPGQFDIVALWQAKTSEDIVKNSFERVTNLQGLFSSETLLAHQPFFNA
Ga0209686_10023446	F081123	N/A	MLNSEKLLKDLNLRLAHFGDPDLASARSLLPYSIPSMNAHQRCLEIAAKLVFKIE
Ga0209686_10023447	F007303	AGG	MPSVMGTKEFLDFQQTIRDLERQVDILLREAATNGPSQRTRELTEKVYILAERAKQIRLPEARNQSTTNQSILEKLPKQFEEDFGKFKGLTPFVEWVRKQHYNATGHNLGRTYGSFGTKEISPGHHHGKLTMNTLEIRCDACGNESPQSERRDYPIHVLLHDHGQWEVCTGQSDCECQGYEGKGVRIGVNLSPERLGKGRA