Scaffold Ga0209686

Basic Information
Taxon OID	3300026315 Open in IMG/M
Scaffold ID	Ga0209686_1000216 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026315 Open in IMG/M

Scaffold ID

Ga0209686_1000216 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29973
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (75.76%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

29973

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (75.76%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001571	Metagenome / Metatranscriptome	669	Y
F003458	Metagenome	485	Y
F028476	Metagenome	191	Y
F076915	Metagenome / Metatranscriptome	117	Y
F095255	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209686_100021615	F095255	AGGA	MTTKIARPGRMTIYFASILTLTLRGVLSPFSPVSHEVVRRSAPAIVVTVEESVSLVLQDVWRIGLQPTVRRNIPVRTSTQPRRPISALQLTTGSGSVADASSVTHSLWVSRFCK
Ga0209686_100021619	F076915	N/A	MASSSTSAVQKEKPTLEQEVFKLKLEWMMAKNDDEKRRISEEIRRRIGFTPSKSQ
Ga0209686_100021622	F003458	GAGG	MAESRIPPGASLLLIGSGLYWILSSQLISSFTVLTPGFFQTNELGTSFITIIGIVSATVGLWIVKVDFDELRALFSRRDGWIFTVPLGLVSADVYLTLIVLSTNSQIVELNPFVSSAIAIGAAALVPFIVSYLALSQGLGLFMLRVGSYLFGPLKSSRYLPFVSICGAAAFGPASNLVLLLEPNAGLVAYLLGALGCVMLSIFLFTKVEKHDLGKPKFQRP
Ga0209686_100021627	F028476	AGG	MKLVTVWRKGSVLVPEYVPGRCNIGRRGRAIRLTTGLVFIAVPIVIGITVLKPVNHLLSLALVVPFYVGILACLEGSMSFCVLHAARGTYDLNEPHGFASRRSGTLEKVRSEDWKGLDRRKASMMHFESLSGAVLLALLLAFS
Ga0209686_10002167	F001571	GGAGG	LNLAVSYETGAGSYVELERKLALVHRVIVPDKDYPKEYATLVTDRRSIFIRQKKTRSSFVLRGEMRYGTALVTDVQPKTLEDYEKTSLKSLATDASNIAIPHDTVISLVMTKGEPNFRLQDLFIWLTMRRQGHKFNVYDFEMNYRDSGNQETKLRFYMVPLGVYFKPRRQTQTRETILREYAMDALQIFQKVLRNRIISS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209686_1000216

Overview

Ecosystem & Geography

Associated Families

Sequences