Scaffold Ga0209268_1009784

Overview

Basic Information

• Taxon OID: 3300026314
• Scaffold ID: Ga0209268_1009784
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3918
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007493	Metagenome / Metatranscriptome	350	Y
F026411	Metagenome / Metatranscriptome	198	Y
F027294	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209268_10097842	F007493	AGGTGG	VIGTTTALIGAAVLLVLILVWVRGQSASGHLPAVMDEWLTGQDDLPEACPPEFVSQIFSSRDFEFISRLESVDLKRLFLRERNAVALLWVQQTAATIRRIMRHHLEASRLSADIKFAMEARILLQYAQLTLICGALFLLIGLAGLERLHWMALRADKLTQRIGNVLREFESGARSREMDGVQS
Ga0209268_10097846	F027294	GAGG	LIDVSQTLRAACNPGPSHKTRWEAANMRVFRGFAIALMLALISLGIFILYNSMARRSAAETDSVIAGAVLFSLALTLLYYISRPTIK
Ga0209268_10097847	F026411	AGG	MKGQEQKGSAAPMGTSPATECRAEFIFYARNQSRKLGSVEVLGDYACDFRRPDWAHRWTDWNSGRNQYLNLFLCAKHARELGLL