NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209268_1001028

Scaffold Ga0209268_1001028


Overview

Basic Information
Taxon OID3300026314 Open in IMG/M
Scaffold IDGa0209268_1001028 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13862
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001940Metagenome / Metatranscriptome614Y
F027789Metagenome / Metatranscriptome193Y
F054741Metagenome / Metatranscriptome139N
F090198Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209268_10010281F090198N/ATGPDATSQLIADRGETLRILDMEVWHDRPYNTKDLIHNPDFNEIILRGPGWGGLIPTEALMTSEDFRKHYDEGYRRNKDGGWVPSKLRGHKKIREKQQ
Ga0209268_100102811F001940GGAVSTMSTKSAKSKSKGNGIDEKDATEIIASVQSMYEKIPAFIRPMLPALPDILRRIPSSAGKYTLNEIIQLLDEAYATGRLKR
Ga0209268_100102814F027789N/AVRREYPHLAGILVHGSVARSEPGPFSDIDMLGVTNRRKKKPADFSYFDGDIYVGVGFLSVAELEKEFTDPRAFFWARGSAETTKILYDPKAVLRRIMLRWKKTKPSHQILEKSLWDEYHNIIEYSGKLRNSWLKRDEFLTRYSARVIAEHVERAIIALNDISVISENYLWRQILKARKRPMHLRTDYPLALGIRGTEEVAKVYRSALRLCQETLRLVKDEFGGKVKHARFRQLLKEPLEKHGL
Ga0209268_10010286F054741GAGLDFTGSTEREQLRIEMRLGEHPYRKKFLATIIGPVSIDDPYFEGTYLLKIEPGAAEKLSVDHILFRPEFYDFHRTFMKRRDVVRESKELGKPSLDTFLLNPILANDGLGGRVYATHRRDLIQALAFRKNEFSVLAYGIITRLKSHSMTHS
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