Scaffold Ga0209268

Basic Information
Taxon OID	3300026314 Open in IMG/M
Scaffold ID	Ga0209268_1000356 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026314 Open in IMG/M

Scaffold ID

Ga0209268_1000356 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25423
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (83.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

25423

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (83.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000611	Metagenome / Metatranscriptome	987	Y
F008873	Metagenome / Metatranscriptome	326	Y
F018336	Metagenome / Metatranscriptome	235	Y
F028125	Metagenome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209268_100035618	F028125	N/A	MTYLQLEIGNTTTRTIVQNMTKAEHVLLQNPSFISYGIWSPANLNTQFQVHLDAQKFLSRAYGLTLDPTARSDMINVTQNMHLNLPARSDYFDTVAWTLSNAVWFAYYSGSTLPPASDYTTAVQDLSTNYNQTGAISAAGDPVIDFAKLLRFLKPITYTDSYFRLQGDALSQSYQTLETGLANQLVKRQGSDGNIVTPNPYKSYLVEDFARDLDASVYLHNNLTYAYSAYRAESDLTSLYLQSNGNFSLPDNGDGLYPTGAYHMLSIANDLRSCSSNAWYNILTSSSKLLNYTLTTQYPDGTFRFFLNISNPDNAITTVNTVSGIVDSYLTIHNTNVLSPETPVNLANCQTISSPSLQQNPSWLYIVIPLAVVIAVAIAYERKHRAKYRGLVEK
Ga0209268_100035619	F018336	AGGCGG	LKVGGFIGLAAGENWNEGNVLEASGVLDKMIPIRRKTGIRAKEALDPILHASSRASNRWICDERYCSVKL
Ga0209268_10003563	F008873	AGGA	LGTTYVASMSRDRKNFEAGQVPQSAMTERKKEDERKPAKLPPFVEPQLFVAVEEANRRLKEIMKVTNPTERLYKSIQRITEVNEMMLRRQDQLTKLYEPSENVRRYLERIRQLVEQITRTKMNELPLISRTVIPQLEGEVSGYVETFERALAEKEKEIETLKAELEALKSKTKN
Ga0209268_10003568	F000611	AGTAG	MQTNMNFPTYVFATVNSGRATKVVEELKRNSQIDIIAPVTGRWDLVLRLKPNTPHNIYQTVKEIREISDVRTTDTHTGFDGMQPTKKLESQMALGVSVLTCEHNTSENVIKQLSNIPGFIEASTVPGQFDIVALWQARTSEEIMKTSVERVTNLPGVFKSETLLAYAPFFKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209268_1000356

Overview

Ecosystem & Geography

Associated Families

Sequences