Scaffold Ga0209761_1040357

Overview

Basic Information

• Taxon OID: 3300026313
• Scaffold ID: Ga0209761_1040357
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2706
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002144	Metagenome / Metatranscriptome	590	Y
F004065	Metagenome / Metatranscriptome	455	Y
F058041	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209761_10403571	F002144	AGGA	MSYGWFGPCPHCQALLSYLEGAAGSQMNPPCPRCHKIVTVSRATFLMRDHSRPGTAAKKPHAA
Ga0209761_10403573	F004065	GGA	MPTKGSSCRAEGNQTLRTVCASCGRSIPTEVGHAHPLDEDIRRETWGLVGYHGKQKAVFPTCAACYGTGWRPPAFVSMN
Ga0209761_10403574	F058041	AGGAGG	MASPWRPRRAPAPVPIRVPVFAVGRDVYVACAGDRSARATLTDDAGKKPLASLGDGAQVAILGWRPGWAGAARYRVRATDSGLEGWLPVGNLRLTEAAIAPAPTAPALPVVQPAPLRVAGVAGSGRRFGQRFE