NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209761_1028876

Scaffold Ga0209761_1028876


Overview

Basic Information
Taxon OID3300026313 Open in IMG/M
Scaffold IDGa0209761_1028876 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3356
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005976Metagenome384Y
F014247Metagenome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0209761_10288761F014247N/AMASSRISRNLFWSSLWIYSLATGLASMIFMAWAFYVETTGRGALFIEPNRVLAAGELATVATGMIALLVLFFRGLSQKEPVTTESSRE
Ga0209761_10288762F005976GGAGLRINILIAGGLILAVSILLLSSEIVASFFGFALGGLNIVIGILTRKAVGIVVPADQLGPLRLSLDKGVIRTNIYTIAFSDKKLVLRKLSSANLTVATALILALLGAALAGPFGIIVGGITAFSLQEFVTQRRRNEIKKEDNVLDPSGRGDLDFPYDELEQVQLFGNRIQLRLKDRIVRIAVSRKYSRMLGPLLQKIIPAKIQS

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