Scaffold Ga0209761_1004639

Overview

Basic Information

• Taxon OID: 3300026313
• Scaffold ID: Ga0209761_1004639
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9094
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008682	Metagenome	329	Y
F027803	Metagenome / Metatranscriptome	193	N
F031050	Metagenome	183	N
F067557	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209761_10046391	F027803	N/A	MALGVSLLTCEHTTSENVIKQLSSIPGFVEASTVPGQFDIVALWQARTSEDIVKTSVERVSNLPGIFKSETLLAYAPFFKA
Ga0209761_100463912	F067557	GAGG	MLYRAHRQASHPDYVQWGRRKVRLSIYVLFSWFALFVVDALFGRFLTPDFLFAGVVAYALGTLIVAMLVERRKIRELRSAWKETHPLFEKAT
Ga0209761_10046394	F031050	N/A	MVAFGQQTFNLIDAEAKERGVTVQELLRAVIIPDWFRTHGELLTKITMPDANRRIQPLTKAEPSLDQDQGSKFHSNRLYLV
Ga0209761_10046399	F008682	N/A	VSNVSSKNAPLVAGKPVAEILVEGELSPFEHEALYKLLKKHFRLEQPAYSELLDESMGTRVNIVFHHPYERNFFTDIFQHDWRDLKDLFKQIRYRRGRLGAAFTLTFAEEKVRLIFSLGLLGDEELGSAMDQIGHLTGIVGQMLRPETMIEPLERVETSYDRRTDRWQGFRGVGSTYKKEYFFDESLFRWKTG