Scaffold Ga0209761_1000470

Overview

Basic Information

• Taxon OID: 3300026313
• Scaffold ID: Ga0209761_1000470
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24554
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001912	Metagenome / Metatranscriptome	618	Y
F002514	Metagenome / Metatranscriptome	552	Y
F014881	Metagenome / Metatranscriptome	259	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209761_100047010	F002514	AGGTGG	LRDRDVMNLLDQIELYVVGIGGERNAQKDYWLFIYNSMRSGLLMTKDMEKHLQYKLKGLGIENPRR
Ga0209761_100047020	F014881	AGCAGG	LPVASFVILAFTVFVLAGGLFILVGAGTSVSLLNVQQGLGFVYPHDINNQTPAEGVFVALLYAFGVVGLYMMFMSTRNAYRPKRAYSFLGFGMLLSFVFMATAYFVLYQKLM
Ga0209761_100047021	F001912	AGGAG	MSLSPWNDGSDPDQLTGLTWDIQLVGHCKILAWQLAKLPGYRREGAVEVRPFTAKKKLWASEAQGISGEAMKGNPTTTVIPRVDESKSSPRATEDLTERKAGLIIGDGHSPT