Scaffold Ga0209761

Basic Information
Taxon OID	3300026313 Open in IMG/M
Scaffold ID	Ga0209761_1000074 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209761_1000074 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	48084
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (71.70%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

48084

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (71.70%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005263	Metagenome / Metatranscriptome	406	Y
F005627	Metagenome / Metatranscriptome	394	Y
F005700	Metagenome / Metatranscriptome	392	N
F022852	Metagenome / Metatranscriptome	212	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209761_100007414	F022852	N/A	MRGLTVTIPYSVRISRELLEEMRRLYDRMEPPKPTFSAVLSHIVKLGWDSYKAQKQGDVGLQKVTVAAYPKKIHDQAFQR
Ga0209761_100007434	F005263	GAGG	VLVNKAIRRYVEWGRYVDTFKLVTSDPRLMKILWSHITIEEAREKGTQNGKDTVVEFILYYFHKFDLDSVLKIFQLIGAEYANAYVYSEFGDKDSRTIILRHSMGRSASAYYGASFKALCDRLGVKVELEESEDQLICKIGPASTLRTIVPKSFKEQLAKQSIERTVGS
Ga0209761_100007437	F005700	GGAG	VDRLALLVLRIICQLRESSGHQYYFERQVGKPGVSRRILRDIRVLVFVFFLSALIVPQVTEVTPQNLVIVSNAFIYVAIFLLAIPSSIHVLLWVLEDSGLRCHNTTRLTVTVPAAWTSRWLSSLGGIGAFVSFAVAMGGSLDRAIALGFTLMISLLPSCILAPTLFYRRLEPGIIAKIRQSKAAMTMARLFPQVSGPSLPASSAPTLRSVRVNEDTKQTAQPHS
Ga0209761_10000749	F005627	N/A	MVGAYLAVGFASLTAPKALWSVNPVTIAFSGSAGIGSSGSVGEVVKCAPKVENVVFHTAVSNPTKLSLSVSPGGEATCGPAPDPVTVTASCLVAAPNCKGTYTGTVTILEGYTTIPPSLSVTIVVT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209761_1000074

Overview

Ecosystem & Geography

Associated Families

Sequences