Scaffold Ga0209761_1000053

Overview

Basic Information

• Taxon OID: 3300026313
• Scaffold ID: Ga0209761_1000053
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52983
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (74.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007071	Metagenome / Metatranscriptome	358	Y
F023303	Metagenome	210	N
F030713	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209761_100005310	F030713	GAG	LPPWEEAKLVFKMQEETRKRKLLEKDMQQRQGWSKRVGPNTSDELEENRKRLRALQKRIEDDR
Ga0209761_100005328	F007071	N/A	MSGLSLRLTEIRSFLLPVSQFVAWPIFFLLTSAISQQLAYFLALLLVLAADVIDKSPRNRGLFRDLVAGGATTVLALFLNDLNGVVIGAIVAVAATFRVVQKLN
Ga0209761_10000537	F023303	GGTGG	LSFGQMKFPLNSGLLLVIALVGTLATTIISFSLIVLGRGGPSLAAYGIGSVSLFAFLLTIQVLHGKSESKDDFVKKGAIRTAIATSLTVAYLMLLALGLDPGLGLNLNNGILANFHLVYIFTIGTYFITASLERIVDLVKGKSSLFG