Scaffold Ga0209723_1002470

Overview

Basic Information

• Taxon OID: 3300026311
• Scaffold ID: Ga0209723_1002470
• Source Dataset Name: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2 time_0 SIP DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24695
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (46.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location

• Location Name: Washington, USA
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030944	Metagenome / Metatranscriptome	184	Y
F090058	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209723_100247015	F090058	GAG	MKLHYYIKGKDIPIYKGKLYIVASNDYEKVCTLIPNFEEISKGELYGHTLLVSYKGVESIFIVLNFDHEYEKMTYGVIVHELRHAADILAKQRDLNTGFENTENNAYIMEWMANTVFTELIRWGFVPNKKK
Ga0209723_100247027	F030944	N/A	MKNMNTTLEIPEGSKAVISGKVINGKNYLVVEVGQEPELKEGDLAIFWNDNTEDAIISVCKRLDDNGRYVDHLGLCWDNALKWDGTKGQYEKVLRGEI