Scaffold Ga0209239_1007414

Overview

Basic Information

• Taxon OID: 3300026310
• Scaffold ID: Ga0209239_1007414
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6033
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003458	Metagenome	485	Y
F018523	Metagenome / Metatranscriptome	234	N
F076915	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209239_10074142	F076915	GGAG	LTTTMASNATSAVQKQKPTLEQEVFKLKLAWIMAKNDDEKRRISEEIRRLIGFSPAKSQ
Ga0209239_10074145	F003458	GAGG	MAGSRIPPGVSLLLIGSGLYWILSSQLISSFTVLSPGLFQANALGASLITIVGIVSATVGLWIVRIDVEELVGLFARRDGWIFTVPLALVAADVYLTLIVLSTNFQIVELNPFVSSAIAIGATALVPFIISYLALSQGLGLFMLRIGSYLFGPLKSSRYLPFVSICGAAAFGPASNLVLLLDPNAGLIAYVFGALGCTVLSVILFTRVEKTAKIT
Ga0209239_10074147	F018523	GGA	VAKRLAQSIVTGYVEHDRGRLDKSAEAFFQVFSTLFPEISPVRSWRAAEIYVQVCVKQDAIENYPGHDSTQILEDPRWETDVKSLLTEFSRTLHVPESYADSTMNYFRFHGVHDSRYVNYLLESDRIFNIRVIGDDYWSKILGSLLLILTECHDKHDRMGLEAGIEFATKYYEIILRAKSSQANKALELVA