Scaffold Ga0209239

Basic Information
Taxon OID	3300026310 Open in IMG/M
Scaffold ID	Ga0209239_1000179 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209239_1000179 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36585
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (36.59%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

36585

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (36.59%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002514	Metagenome / Metatranscriptome	552	Y
F005811	Metagenome / Metatranscriptome	389	N
F040558	Metagenome	161	N
F042817	Metagenome	157	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209239_10001791	F042817	N/A	CPERHVSIVVDTDSPIRQTKKKESMILDPCYSLVVNQSVTSALAAEALMAPVKRIIVDAAQALAATVAELRGPLSATIARRHCLVERSETTSLDLFASLGLQALMSAMTMGWTLESGWMMRRIWMSARSSVRIRMGRTCMMLWIGMRVALGFRLGFHVDSSRKKSRPVIVYF
Ga0209239_100017915	F040558	N/A	MTSFIRLTPKNILRIILLVVFPWLPPYLFEKTDFYFHLTHQPDWYYNLSGNRLFVDMASFAVWGIVAAYLLRPRWAVIQIALNALLVWFLFYVACPIYAPGGVWQPECYYAGPDGLVGFRLAGIMFCYGALPVLVRAASKGDALDHRIRPALAVLSGVILSVVMIWYPLSAWFSGVTYLPLFLTFQTVLLIGVPQIATGILAARMGRSLKIGATSGIVSLLFMSAVFWTPECPGCDRSSLYLFAPSWGIFALAGSITELGLPSLLRLPKMPGWWGAIRMEDVRRVGLALVLTVSIWTLVARDFWDPSVLYASSISSNPGELTLGQPFYPYVGAYYDSSQYRICCVEIGVSMSMANPRILAPDNFLMVGMGVQSPNCCIDGWDFGWRADVFLLPNSSMIISGSSWETCDGNANCGGYMWEHLWYHSQTILNPQNLSTPIYLQMKWEPVTVDGQPRSLVNWYYNTTGVAWTKFGSFLPDRRLGTYFDIGLSGGPASEIPQGSAFLYQFGVASKRPVSGWSVSLFNPSFQYLGTWRTMERANIVQGDFSYWKVNYRWGGRPYPGVTARANLLDSSLPVDTVTFSYTGGTMKDFTPLW
Ga0209239_10001792	F005811	GGAGG	MIRPENRRQWVPKTAELTLSAGLAATYIITTFIPLTPFIGGPGFITLEIVMLPIIAALLRPIPAFATVFVGSLGMALGQPSFYQVFGLPGLLIPLVAVGAGSIAFHYRLGPIVPWTYVLAGAVYYIALSKGGTLFWLVPYLFVIVSLPVAFRLKSNPRIGLLTFYIAMTEQVTLNILSISILSLTGPVWAVITPLMYVERTIATLGGAAGIVALKSGLGGRLDLMDQSSREVRQ
Ga0209239_10001798	F002514	N/A	VDERTGLPLAGREDLRDRDVMNLLDQLELYTLDSGRKEPSQKDYWLFVYKSMKSGLLMTKNMEKHLRYKLKALDIQP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209239_1000179

Overview

Ecosystem & Geography

Associated Families

Sequences