Basic Information | |
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Taxon OID | 3300026310 Open in IMG/M |
Scaffold ID | Ga0209239_1000086 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 54885 |
Total Scaffold Genes | 65 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 45 (69.23%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Angelo Coastal Reserve, California, USA | |||||||
Coordinates | Lat. (o) | 39.73825 | Long. (o) | -123.6301 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F015711 | Metagenome / Metatranscriptome | 252 | Y |
F032621 | Metagenome | 179 | N |
F058833 | Metagenome / Metatranscriptome | 134 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209239_100008615 | F032621 | N/A | LSSTGSNLAVQTAKEGFIGRLPPASLVYWIRLGFGVLAGVIYNLAGFGSLGVGLGTLSMITVGIGVYSVSIFLVKNLLGYGPEVLKGPNKHVTIGMGSYIIWMIFTTILLYTVLNPHPS |
Ga0209239_100008653 | F015711 | N/A | LVVTIHQYAESLCFKLFSAESSMSNKDRMNSADPQKTHGHSKLVGSLVLGIIVLLSTWSAVAYFHVASLQEYATNIIKPADSLLRITLIVAFGGFISSIPILRSLSRKDRTTQVKVQPIPQYRGPKVHPLFMTSRPARDTSFVVRKTKNKGRISRNRAGERLPPTYPE |
Ga0209239_100008664 | F058833 | GAG | LTTAAKDPGWMVNPVLFIIVVGLTALFVAAILYQVLGVR |
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