NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209239_1000011

Scaffold Ga0209239_1000011


Overview

Basic Information
Taxon OID3300026310 Open in IMG/M
Scaffold IDGa0209239_1000011 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)117657
Total Scaffold Genes128 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)88 (68.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003037Metagenome / Metatranscriptome511Y
F007642Metagenome347Y
F008127Metagenome338N
F046962Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0209239_10000116F007642AGGMPSLTSREAVAVQEKPLAEVLVEGELSPFEDEALYRILRRTFRVEHPSYAELSDEDLATRVNVTFHYPYVTAIFTNVLRENWRELKELLRQVRYRRGRAGAAVTFTFVGEKNRLVFRSGVLEEKELSSALDQIGHLTGILGQMLRPETMEKPLELVEAKYDMRSDRWHEFKGFGSSDPTESYVFDESSFRWVRS
Ga0209239_10000117F008127AGTAGMSDEFLPRAHSKRLGELERSNWRSLRDGRNFDRIDPAIREIVSLLNKKGYRTFSSCSGGHPTNPRWKINRHESGYLAFSPPSNVAFTLYLGVRKKNKDFTVEAQAVIDDGDGGDRETMCTRFYWQLSDRKKHKLEHYGRLFAQMKGIVEDLPREPGNGNDVLAGLLGKENLRTGLRIVRRQMRRFTSN
Ga0209239_100001180F003037GAGLWVEFKCPLCGKDLDDDKTMANFLVCADSSHGPLRFFTGDGCYFTTNEQVAEDLMKKGKRVHIVDPKEFFGNQTINLE
Ga0209239_100001193F046962GGAMEETANSGYPPETTTRIVLQDTMTGDQLKNLLAELISSSASLNVRVWLDGVYTDIENAGPHREWMKGREVYFKVEGKVDGQNCLEEAAPRSI
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