Scaffold Ga0209239

Basic Information
Taxon OID	3300026310 Open in IMG/M
Scaffold ID	Ga0209239_1000010 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209239_1000010 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	124979
Total Scaffold Genes	122 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	93 (76.23%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

124979

Total Scaffold Genes

122 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

93 (76.23%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001078	Metagenome / Metatranscriptome	785	Y
F015194	Metagenome / Metatranscriptome	256	Y
F018818	Metagenome / Metatranscriptome	233	Y
F077702	Metagenome	117	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209239_1000010111	F077702	AGG	MDTQIKGFADSMYEQFFVESAVSTRADTTNLLKERTTKRTAKTPVKESQINGIVKFQVRHIERCLAARLESYERAYEETGKVPTEEELEEILAELKTVGDLQVKHSSSFIDNFLRARRAQVQCDPEQSLMEGCAEAHDRVLRTWKNWGEKIRIKEVAPAKIKAAAKPPAQTVAETQPIQDEAVPMEKQRSNWTLFAYYWCFFKRLGNECNRTWRGELAAALLTATGAYLLIHRVSAIAWTSFKSEGLSMVIAVWSIALWHVLRTPWLLHKEASSTGGGIRRVHWGHGLFGIVVLAGVLAGSGLYARKQLAKPIAPVMAAAYVEPKNSLRKRTLSLANDLNVFLGERWSKRPPGHGPDTLKYDQATLDLYMKFYKSRMVGILQELQDKGLDTGLLGAPGGAPSRFLLPDEIRQLRDLAYHLDEKGSVVKF
Ga0209239_100001026	F001078	AGG	VAAFAPICIMLNRTFIPLALLSLAFAADAAAQSAVPDTTPTIGPARPELFKRIIANQKKGEAALDLYERIERVETRKNPNDPAPSSVKISRVIPSGTGMVRIALGPDGKPKDSATYRADLESLARALTLLVNDSRSQREALEKYAKKKKDRNDLIDATHNAFLFTLVGNEQRGERMLSKYKMDPNPAFKPTTRFTSIFPKVRGLVWIDDASGEAARIEGDVTEDISIGLFLGKIYKGSHFMQERYEFVPGLWLVSFSQYDFDGRKLFSGFSVHERTFYSNYRYIGPPKEALAAIRQELEHAELDKPLAGTADQ
Ga0209239_100001059	F015194	AGGAGG	MNFPQTNLDLLAARVQKLEAANHRWKFVNALLLLSGVSVLLMVAKPADRLQPNVIRAGSVEAQEFILKDETGHVYARLSLNPSVPKPTQKGRTYLVPSDTIPGGEAALQFYNEKGEVLWTAPSLGGAQFVPAR
Ga0209239_10000109	F018818	AGG	VRGPPGASASFDSGRHLGGTVSKRSFYAIACSAAVGLVLVIFFLTRTAALKTPPGDTANKSWNREAIRATYVASQLRETDKTHSTLTLSYDLENNTDSDFRLDAGPGFVVLSRLEADGSLSQQEPVRLSYPVFLPARQHARLAIEITQTFAWPSEDNPAYIDKLREFVKQRLANVQEFVLFDQSSRTEVKLPGVWQQLQETAQASY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209239_1000010

Overview

Ecosystem & Geography

Associated Families

Sequences