NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209055_1032008

Scaffold Ga0209055_1032008


Overview

Basic Information
Taxon OID3300026309 Open in IMG/M
Scaffold IDGa0209055_1032008 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2396
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000186Metagenome1702Y
F001899Metagenome620Y

Sequences

Protein IDFamilyRBSSequence
Ga0209055_10320082F001899N/AVSALAVTCGFRFEVRPEDEVVVLEAEHHTVHVCVDCLTLLTVHRRIHHMKVEKVIVEMAEGRSLVAFA
Ga0209055_10320084F000186N/AMSSQRSDWRERLHVNPSRMEQELAIKLQDNGIRYQTQVEIPVTTADFYFSLESRPLLVFVDGRIHLRTAKMAKDEELRSLLRRRGYRILELFYESYSDKKRDQLCEEIMNGLGMQ

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