NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209055_1014690

Scaffold Ga0209055_1014690


Overview

Basic Information
Taxon OID3300026309 Open in IMG/M
Scaffold IDGa0209055_1014690 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3945
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016387Metagenome / Metatranscriptome247N
F022177Metagenome / Metatranscriptome215Y
F029395Metagenome188Y
F049864Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0209055_10146902F016387GGAGMTLSPTRTTLQLKPPLVSSSRSVTRTLRLDEDVEAGIVEMAEREQFSFNLLANRALRKLVEWEDKAGKFGFIQVPTSLVEKVFSILTDEEARELGGEAGANTIPEMVLFWFKKFNPENALKALEMIGSYGNAFRLQYTIDGETDTVVLKHDRGPRVSAFYGEMFQSLFKPTGARVEIHETDGQVNAANSRRDTPLIPSFPGAKNGRNYKR
Ga0209055_10146904F029395GGAMDAMLSSNEKREGPPFSESREPEADGRLKGLLVNLIDSSKALDVRVWLDGVYTDIGDEQVRGNWMNDRDVYFKVEGRVDKRNGS
Ga0209055_10146905F022177GGCGGMSDTSDRFQENYRWTAYMKLKGQTGARREEEILDEFDRFVQSLRGVGVDYNIIVMVEGGVPRQLRSEYTARDPEVKIAREGPGA
Ga0209055_10146906F049864GGAGMAKFILSVGDGTFKILESEAKRRDVTVQQLLRAVIVPEWVRDNPEINPSSMAQRTNSPSMPPREIPPHLMHQSIYPTQRDQLLQVPVNRLRT
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