Scaffold Ga0209055_1008720

Overview

Basic Information

• Taxon OID: 3300026309
• Scaffold ID: Ga0209055_1008720
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5502
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002368	Metagenome / Metatranscriptome	566	Y
F031048	Metagenome	183	Y
F040029	Metagenome / Metatranscriptome	162	Y
F069926	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209055_10087204	F002368	N/A	MGIQLTPTKIKGSKYLLIPKDLAQLLEIDDGSVLNLTIEDTDKGQRLVYSIRQKSGNVVG
Ga0209055_10087205	F040029	N/A	VLLGINVFLAASVITALLDRHLPSILQYLFQGAAGAGLGELLLSQEVNSATRVWASIVYLAFALSSLVALNIRLAIVRRGMNIASILSQMMTVPVVMISALFLSSFLENGGDLVFSPTSIVTIAVSVLVANLSIFGLLREYSRHGSIRSGLVAFPTSAAPASTGSAGTTLDSDRLSEQDIKLHHSAEGDDWEESPTKEKE
Ga0209055_10087206	F031048	AGTAG	VESFKHILDLKPKRQVRLGLLLVSTSITITTSLFAYNRITYEFPLAVGNTGQSALGPPTSAGVGILYAMIVVAAILGFGAILSIFGSLRNVSNRITEIVVREPSPEDSIYGSQKKAEWEEASMQGESKATDDEILNALWHSKDKKTGTAE
Ga0209055_10087208	F069926	GGA	MAIIVSSLFLVYWYEPGRVIWTKDGTVAAVHQYQDSNTGTNWNVLVYTYQQNDMGYLVNTGYVALNGPGTQGHGNYCWNDGNGKCLTAPLSFSLNQTLAVDALNDGNFMLKNRQL