Scaffold Ga0209055_1006218

Overview

Basic Information

• Taxon OID: 3300026309
• Scaffold ID: Ga0209055_1006218
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6778
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000528	Metagenome / Metatranscriptome	1047	Y
F007165	Metagenome / Metatranscriptome	356	Y
F050281	Metagenome	145	Y
F091706	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209055_100621813	F007165	AGGAG	VDLMAPPDRRKFQVRCDAGSSGRFEVGTDTLSVRVGQRMRTGKEEEMWDSVQILCKERSDGSLTVEVIVCHPDWEEAKTIAAIHSRPQDDGTATPGLKCDLRA
Ga0209055_10062183	F050281	GGA	MIYQRQFSSQQSKKIARVKDALGRLRANPADAVAVMALYEACDRELQEVAVRYFGKNQLGKKAVLNLLVAVVSRAWSYDPQSMNASEWVSGVAGAEARKLREALDASRQHRPRLPRAV
Ga0209055_10062184	F000528	GAG	MGEWKAQISLRVRQALRAELEEFAVRERRKLGNITELILEWAFEQLKTAGSTERLLKYKIRLPDIAATGRKLHK
Ga0209055_10062185	F091706	AGGA	MKADSFGEIFLWNREMDRLIRVLQRMESSGILSKHEMKVYEVQLEEARAGLNADFAGRIATSERADQSRLKRQRTAWERKAPDRNQKDLPH