NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209055_1005035

Scaffold Ga0209055_1005035


Overview

Basic Information
Taxon OID3300026309 Open in IMG/M
Scaffold IDGa0209055_1005035 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7702
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043324Metagenome156Y
F074722Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0209055_10050355F043324AGGAMMTWPFATRQDLNLKRMVSRMFKVARLDGDTFRELRDDASTTVQSVSLVVIIGLCYGAGLGFFGFFVAGISVLDLFTITMIGLFSGIIIAFVWSGTTFLIVTKLFRRTMSYWGLARPFFFSWTPGLLFILISSPIPVISEIIRAAGTAWIGVASVFAVKHAAGFSVQQSMLTFIIGVLVLIFIQSLVPLN
Ga0209055_10050358F074722GGAMKDSPLMLIRAPNPVTSSEFYKLHQHFISTPELTLISRETVVSILPKFMQTLDDVIYRELEKMAKRRGITIQELIRAVIVPEWINGHNGGDARDPPATKLNNWR

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