NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209055_1003055

Scaffold Ga0209055_1003055


Overview

Basic Information
Taxon OID3300026309 Open in IMG/M
Scaffold IDGa0209055_1003055 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10327
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006617Metagenome / Metatranscriptome368N
F008019Metagenome340Y
F012566Metagenome / Metatranscriptome279Y
F031444Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0209055_100305510F006617GGALIFYRVTPALVVMRGEGRDEAANMVGAKPMLLWYVWIRLVDGAWHRLDDISKQLRLPSNAIEWAAKFLCDKGMAERGFEEDEIRLHQGNAKFEDAVRALSSSTKASK
Ga0209055_10030553F031444GGALDPNSDFASIFQSSVKDGLRNTLGETVMQTLVPLLKQTLQTYAEKPSEFHRELQFYFGFGALTLERMIVKELFQKLNLHYTSSSELDFETSIGLARQDLSLLQRGVTRK
Ga0209055_10030554F012566AGGAGLPSQNIGRNFESENLSTEKNRDDNTVCKQILDSDPSIRVAAFIEGAEVTGYAETARTKNVLSQSIDLRKRIGFWSSIVTEMARQTDELFGRTESVLITHKGLKMVTIPLSGRRSLGLSLDRSADTEKIILKIMTKFDLASTD
Ga0209055_10030559F008019N/ALGVRKKIAVSIVLIIIVSLAVWQFTSPQLLPMVGGKYSAFGPYSNRGSWTIMETMRYGSAYLAISISNITFPRTGIGTDYSLVISVVNHTITNSIVKGFGVRVTGMSIQDSVDGSTSTWGNGHDVSDAVQATSIFFFRTSTNHMLRFTLTFQLYDLLPLGSIPDQTVTNSFNITQTVL
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