Scaffold Ga0209055_1002956

Overview

Basic Information

• Taxon OID: 3300026309
• Scaffold ID: Ga0209055_1002956
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10536
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000186	Metagenome	1702	Y
F007573	Metagenome	348	Y
F039075	Metagenome	164	Y
F040019	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209055_100295613	F040019	N/A	MSFQVLFHERDVAGFCAGCNLRLRADKTIGRRTPEYYAEFTRQVETSYPDRIQRIFLKANSVSEAKRVYPVVRRLGYRTKQSSPMLHARLVMVETTRDQAVALIEKLREQGMQVALQDNLHSRPP
Ga0209055_100295614	F039075	GAGG	VPMFAPGIISLAFYKRRPSRVQVILGLVATIVLSALLGYISPGGPLGQVGSVILAVIGGVILYVVILAVLLYWYQPRHAKRPITKPTAPAP
Ga0209055_10029567	F000186	N/A	MEQELAIKLQGDCIHYQTQVEIPVTTADFYLSLEARPMIVSVDGRVHLGTGQTAKDEELRSLLRKRRYRILELIYDSYSDRRREQLYEQILEDLRRK
Ga0209055_10029569	F007573	N/A	MSFELARLREVAETYTYNDAGTHGVWPKLVWERRNQSPATRLDDAVEFLGKWKALRFKGGGRAFRRICTSWLRKNLTDLQRLQGRVLYFLAPEDFQRILGISASFRDCGAPPTTYGKALHFFLPETVMLWDQAIVRNTYKLRPDPESFASYQRFRWKLLHHVTRNKTVSVLRQLERDHARTVGYSEPMTMILDHLAFSRKLSARAVAALGGSSQAFSDDLS