Scaffold Ga0209055_1002694

Overview

Basic Information

• Taxon OID: 3300026309
• Scaffold ID: Ga0209055_1002694
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11089
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012334	Metagenome	281	Y
F015579	Metagenome / Metatranscriptome	253	Y
F019106	Metagenome	231	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209055_10026946	F012334	N/A	LSSKRPVELGRDARLFLLFLSEINLVMGALFFVYPSLVVDLWPWPVKALAIRFIGAIFLAIAFGCWSALRAKIWQRAKILVLVGGTFFGITSIVAIVLALSQGVGYVVSSWTGYFLVANLGNFYLLNRYGWPRKPQDRLGASQPWKTARWFFRIQTVVVGVFGIMMLLLPSIAQAQFWPWQVAIPTLQMFAGLFLATCLATGWASLQTDIGRIRVLLPLDVIFPSLALLAVGIHWDVISIQSPSVLVTGVWVFIYAFVAVGSAYLYFSSRKTGVM
Ga0209055_10026947	F019106	AGCAG	MASQVPLLRLAKFLVLIGGIVLLIGGILQAIDVRALVDFGTNLARLGSLTGIVIGILVGILALVGSREVADPAWSFILLILGLFVGSLGGILVFIGGLIGLVAHYVKV
Ga0209055_10026948	F015579	AGGTGG	MTGYLCPKPRARQYVYAQIERSLENNGGEVHLGSDSKKPPRPRHRFSFSGQSKRPEGSSMPRAANVTRDDILNSLTKHAHPQEPEQTVPETEEAAQFQGPNETAVEVRARNRGSARGALVIFLGGFVAVWLYGYVTGAYEIPYLRGVTQNPAVQVGVQLGSSNPILFGAVSLSVLLGAIYLLHRKKN