Scaffold Ga0209055_1001123

Overview

Basic Information

• Taxon OID: 3300026309
• Scaffold ID: Ga0209055_1001123
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17879
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (76.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000517	Metagenome / Metatranscriptome	1061	Y
F018957	Metagenome	232	Y
F038166	Metagenome	166	Y
F104063	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209055_100112310	F018957	N/A	MIRWLVVVALVAGCATQQASQPDCTMKWTGQPPVQVDSCTGRGEDLTAGWHWYDYVFGIPFGIVGFYDPARDAG
Ga0209055_100112323	F104063	N/A	MSRVVVAAGIVGLLLFVEPPLDGLAGYLLFEEGHRIIGTIVVSVNAVIAAGVLFSFLPEWFHPRGLMLAAAIAHYNVNVWLGLVALVYAVAVGAWPPALVLLVGAVLVAIGGRGVVAWLSSGRSRL
Ga0209055_100112324	F038166	AGGAGG	MMRLRRTSVIVMLTLLASAATAYAECAWVLWQQQAEIAPGGSVSSSDWTWLTAEATSTEAECRQASARFDTSLGPKDADGYSTVTSKGKKVRVRNVCLPDGTDPRGPKGK
Ga0209055_10011239	F000517	AGGAG	MRMHLALLLAAVFALSPFDGIAGEKQIVDVKELAGRWQGWITREQGQERATLIVSADGSYRALTPQGASTEGKFYLQDGKLRYRSSRTTGTASLSEDRGKTMLTVMPEDPKYHTGRAEYERVKE