Scaffold Ga0209055_1000906

Overview

Basic Information

• Taxon OID: 3300026309
• Scaffold ID: Ga0209055_1000906
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19892
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (79.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015454	Metagenome	254	Y
F020031	Metagenome / Metatranscriptome	226	N
F045432	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209055_100090610	F015454	GGAG	MRSVVALLLLIIALFAPYLPVSALAAPNDFRVISGTLLHPARLNPDTPVAVLKSDEGTVCYADLRAVSSIPTVERGAAVTLVGFEGSRPDQLAAQVIYPPADTPRPADAPSVRSQRINGRIGSLSGPTVVVRAADGREATMLLRGVSARVLRLLRPGDLVTVFGRPGDTDFVVTGIIKRE
Ga0209055_100090620	F045432	N/A	MLNMALGLVWGQAAFRILGTMSILQRDWVWKSLARRRGRVALDSDDVGRRRVAFDDGILFVCLVVFVGLVVLGSVLMLLFGAAATLTSSKLRSCPEFDLCGAPAPDGNESLSADDPLTDGLRMIR
Ga0209055_100090628	F020031	AGGAGG	VSVPGERLLAAIEAEIKNISKLEHTLARTKLVLQEQASRLRLGTNPELVMTSLRLAVPHETTLALIERVDPVLSSPAELPPKK